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SATB1

PDB rendering based on 1yse.
Available structures
1yse
Identifiers
Symbols SATB1;
External IDs OMIM602075 MGI105084 HomoloGene2232 GeneCards: SATB1 Gene
RNA expression pattern
PBB GE SATB1 203408 s at tn.png
More reference expression data
Orthologs
Species Human Mouse
Entrez 6304 20230
Ensembl ENSG00000182568 ENSMUSG00000023927
UniProt Q01826 Q8C2Q2
RefSeq (mRNA) NM_002971 NM_009122
RefSeq (protein) NP_002962 NP_033148
Location (UCSC) Chr 3:
18.37 - 18.46 Mb
Chr 17:
51.2 - 51.3 Mb
PubMed search [1] [2]

SATB1 (special AT-rich sequence-binding protein-1) is a protein which in humans is encoded by the SATB1 gene.[1]

Contents

Function

SATB1, the global chromatin organizer and transcription factor, has emerged as a key factor integrating higher-order chromatin architecture with gene regulation.[2] Recent studies have unraveled the role of SATB1 in organization of chromatin 'loopscape' and its dynamic nature in response to physiological stimuli.[3] At genome-wide level, SATB1 seems to play a role in organization of the transcriptionally poised chromatin. SATB1 organizes the MHC class-I locus into distinct chromatin loops by tethering MARs to nuclear matrix at fixed distances. Silencing of SATB1 mimics the effects of IFN-γ treatment on chromatin loop architecture of the MHC class I locus and altered expression of genes within the locus. SATB1 has also been shown to induce breast cancer tumor growth and metastasis through the altered expression of large numbers of genes.

Interactions

SATB1 has been shown to interact with HDAC1,[4] SMARCA5,[4] MTA2,[4] CHD4,[4] CUTL1,[5] POLR2J[6] and BAZ1A.[4]

References

  1. ^ "Entrez Gene: SATB1 SATB homeobox 1". http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6304.  
  2. ^ Pavan Kumar P, Purbey PK, Sinha CK, Notani D, Limaye A, Jayani RS, Galande S (April 2006). "Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo". Mol. Cell 22 (2): 231–43. doi:10.1016/j.molcel.2006.03.010. PMID 16630892.  
  3. ^ Galande S, Purbey PK, Notani D, Kumar PP (October 2007). "The third dimension of gene regulation: organization of dynamic chromatin loopscape by SATB1". Curr. Opin. Genet. Dev. 17 (5): 408–14. doi:10.1016/j.gde.2007.08.003. PMID 17913490.  
  4. ^ a b c d e Yasui, Dag; Miyano Masaru, Cai Shutao, Varga-Weisz Patrick, Kohwi-Shigematsu Terumi (Oct. 2002). "SATB1 targets chromatin remodelling to regulate genes over long distances". Nature (England) 419 (6907): 641–5. doi:10.1038/nature01084. ISSN 0028-0836. PMID 12374985.  
  5. ^ Liu, J; Barnett A, Neufeld E J, Dudley J P (Jul. 1999). "Homeoproteins CDP and SATB1 interact: potential for tissue-specific regulation". Mol. Cell. Biol. (UNITED STATES) 19 (7): 4918–26. ISSN 0270-7306. PMID 10373541.  
  6. ^ Durrin, Linda K; Krontiris Theodore G (Jun. 2002). "The thymocyte-specific MAR binding protein, SATB1, interacts in vitro with a novel variant of DNA-directed RNA polymerase II, subunit 11". Genomics (United States) 79 (6): 809–17. doi:10.1006/geno.2002.6772. ISSN 0888-7543. PMID 12036295.  

Further reading

  • Dickinson LA, Joh T, Kohwi Y, Kohwi-Shigematsu T (1992). "A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition.". Cell 70 (4): 631–45. doi:10.1016/0092-8674(92)90432-C. PMID 1505028.  
  • Robertson NG, Khetarpal U, Gutiérrez-Espeleta GA, et al. (1995). "Isolation of novel and known genes from a human fetal cochlear cDNA library using subtractive hybridization and differential screening.". Genomics 23 (1): 42–50. doi:10.1006/geno.1994.1457. PMID 7829101.  
  • Nakagomi K, Kohwi Y, Dickinson LA, Kohwi-Shigematsu T (1994). "A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1.". Mol. Cell. Biol. 14 (3): 1852–60. PMID 8114718.  
  • Xu L, Deng HX, Xia JH, et al. (1997). "Assignment of SATB1 to human chromosome band 3p23 by in situ hybridization.". Cytogenet. Cell Genet. 77 (3-4): 205–6. doi:10.1159/000134577. PMID 9284917.  
  • Reddy PH, Stockburger E, Gillevet P, Tagle DA (1998). "Mapping and characterization of novel (CAG)n repeat cDNAs from adult human brain derived by the oligo capture method.". Genomics 46 (2): 174–82. doi:10.1006/geno.1997.5044. PMID 9417904.  
  • Escalier D, Allenet B, Badrichani A, Garchon HJ (1999). "High level expression of the Xlr nuclear protein in immature thymocytes and colocalization with the matrix-associated region-binding SATB1 protein.". J. Immunol. 162 (1): 292–8. PMID 9886398.  
  • Liu J, Barnett A, Neufeld EJ, Dudley JP (1999). "Homeoproteins CDP and SATB1 interact: potential for tissue-specific regulation.". Mol. Cell. Biol. 19 (7): 4918–26. PMID 10373541.  
  • Galande S, Dickinson LA, Mian IS, et al. (2001). "SATB1 cleavage by caspase 6 disrupts PDZ domain-mediated dimerization, causing detachment from chromatin early in T-cell apoptosis.". Mol. Cell. Biol. 21 (16): 5591–604. doi:10.1128/MCB.21.16.5591-5604.2001. PMID 11463840.  
  • Kieffer LJ, Greally JM, Landres I, et al. (2002). "Identification of a candidate regulatory region in the human CD8 gene complex by colocalization of DNase I hypersensitive sites and matrix attachment regions which bind SATB1 and GATA-3.". J. Immunol. 168 (8): 3915–22. PMID 11937547.  
  • Durrin LK, Krontiris TG (2002). "The thymocyte-specific MAR binding protein, SATB1, interacts in vitro with a novel variant of DNA-directed RNA polymerase II, subunit 11.". Genomics 79 (6): 809–17. doi:10.1006/geno.2002.6772. PMID 12036295.  
  • Yasui D, Miyano M, Cai S, et al. (2002). "SATB1 targets chromatin remodelling to regulate genes over long distances.". Nature 419 (6907): 641–5. doi:10.1038/nature01084. PMID 12374985.  
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMID 12477932.  
  • Cai S, Han HJ, Kohwi-Shigematsu T (2003). "Tissue-specific nuclear architecture and gene expression regulated by SATB1.". Nat. Genet. 34 (1): 42–51. doi:10.1038/ng1146. PMID 12692553.  
  • Fujii Y, Kumatori A, Nakamura M (2004). "SATB1 makes a complex with p300 and represses gp91(phox) promoter activity.". Microbiol. Immunol. 47 (10): 803–11. PMID 14605447.  
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMID 15489334.  
  • Gocke CB, Yu H, Kang J (2005). "Systematic identification and analysis of mammalian small ubiquitin-like modifier substrates.". J. Biol. Chem. 280 (6): 5004–12. doi:10.1074/jbc.M411718200. PMID 15561718.  
  • Wen J, Huang S, Rogers H, et al. (2005). "SATB1 family protein expressed during early erythroid differentiation modifies globin gene expression.". Blood 105 (8): 3330–9. doi:10.1182/blood-2004-08-2988. PMID 15618465.  
  • Seo J, Lozano MM, Dudley JP (2005). "Nuclear matrix binding regulates SATB1-mediated transcriptional repression.". J. Biol. Chem. 280 (26): 24600–9. doi:10.1074/jbc.M414076200. PMID 15851481.  
  • Nakayama Y, Mian IS, Kohwi-Shigematsu T, Ogawa T (2006). "A nuclear targeting determinant for SATB1, a genome organizer in the T cell lineage.". Cell Cycle 4 (8): 1099–106. PMID 15970696.  
  • Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network.". Nature 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514.  
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